新增脚本filename_regulation_generator.py，有命名规范需要修改时，只需要修改ConfigParams.py的Filename类里面的变量的值，之后直接运行脚本filename_regulation_generator.py即可获取最新版本的数据结构化输入和输出命名规范.html
This commit is contained in:
168
数据结构化输入和输出命名规范.html
Normal file
168
数据结构化输入和输出命名规范.html
Normal file
@ -0,0 +1,168 @@
|
||||
<h1>文件命名规范</h1>
|
||||
<h3>当一份数据被完整走完标注流程后，数据文件夹目录结构将会是：</h3>
|
||||
<pre><code>.../Label/<sampID>
|
||||
|-Artifact_a_采样率.txt
|
||||
|-Artifact_b_采样率.txt
|
||||
|-Artifact_c_采样率.csv
|
||||
|-SQ_label_10s.csv
|
||||
|-SQ_label_30s.csv
|
||||
|-Resp_quality_label.txt
|
||||
|-Tho_peak_采样率.txt
|
||||
|-SA Label_corrected.csv
|
||||
|-SA Label_add.csv
|
||||
|-Precisely_Align_Info.txt
|
||||
|-Approximately_Align_Info.csv
|
||||
.../OrgBCG_Aligned/<sampID>
|
||||
|-BCG_Sync_采样率.txt
|
||||
|-OrgBCG_Sync_采样率.txt
|
||||
|-Jpeak_Sync_采样率.txt
|
||||
.../OrgBCG_Text/<sampID>
|
||||
|-OrgBCG_Raw_采样率.txt
|
||||
|-BCG_Filter_采样率.txt
|
||||
|-Jpeak_revise_采样率.txt
|
||||
|-Jpeak_revise_corrected_采样率.txt
|
||||
.../OrgBCG_Origin/<sampID>
|
||||
|-...
|
||||
.../PSG_Aligned/<sampID>
|
||||
|-ECG_Sync_采样率.txt
|
||||
|-Rpeak_Sync_采样率.txt
|
||||
|-5_class_Sync_采样率.txt
|
||||
|-SA Label_Sync.csv
|
||||
|-Effort Abd_Sync_采样率.txt
|
||||
|-Effort Tho_Sync_采样率.txt
|
||||
|-Flow T_Sync_采样率.txt
|
||||
|-Flow P_Sync_采样率.txt
|
||||
|-Snore_Sync_采样率.txt
|
||||
|-SpO2_Sync_采样率.txt
|
||||
.../PSG_Text/<sampID>
|
||||
|-ECG II_Raw_采样率.txt
|
||||
|-ECG_Filter_采样率.txt
|
||||
|-Rpeak_final_采样率.txt
|
||||
|-Rpeak_final_corrected_采样率.txt
|
||||
|-5_class_Raw_采样率.txt
|
||||
|-SA Label_Raw.csv
|
||||
|-Effort Abd_Raw_采样率.txt
|
||||
|-Effort Tho_Raw_采样率.txt
|
||||
|-Flow T_Raw_采样率.txt
|
||||
|-Flow P_Raw_采样率.txt
|
||||
|-Snore_Raw_采样率.txt
|
||||
|-SpO2_Raw_采样率.txt
|
||||
|-StartTime_Raw.txt
|
||||
.../PSG_Origin/<sampID>
|
||||
|-...
|
||||
.../Receive_Origin
|
||||
|-...
|
||||
.../Report
|
||||
|-...
|
||||
</code></pre>
|
||||
<h3>1 数据粗同步</h3>
|
||||
<p>输入：</p>
|
||||
<p>原始OrgBCG信号：<code>./OrgBCG_Text/<sampID>/OrgBCG_Raw_采样率.txt</code></p>
|
||||
<p>原始Tho信号：<code>./PSG_Text/<sampID>/Effort Tho_Raw_采样率.txt</code></p>
|
||||
<p>原始Abd信号：<code>./PSG_Text/<sampID>/Effort Abd_Raw_采样率.txt</code></p>
|
||||
<p>输出：</p>
|
||||
<p>粗同步后的位置索引：<code>./Label/<sampID>/Approximately_Align_Info.csv</code></p>
|
||||
<h3>2 预处理</h3>
|
||||
<p>输入：</p>
|
||||
<p>原始OrgBCG信号：<code>./OrgBCG_Text/<sampID>/OrgBCG_Raw_采样率.txt</code></p>
|
||||
<p>原始ECG信号：<code>./PSG_Text/<sampID>/ECG II_Raw_采样率.txt</code></p>
|
||||
<p>输出：</p>
|
||||
<p>滤波后的BCG信号：<code>./OrgBCG_Text/<sampID>/BCG_Filter_采样率.txt</code></p>
|
||||
<p>滤波后的ECG信号：<code>./PSG_Text/<sampID>/ECG_Filter_采样率.txt</code></p>
|
||||
<h3>3 数据精同步</h3>
|
||||
<h4>3.1 算法定位</h4>
|
||||
<h4>3.1.1 R峰算法定位</h4>
|
||||
<p>输入：</p>
|
||||
<p>滤波后的ECG信号：<code>./PSG_Text/<sampID>/ECG_Filter_采样率.txt</code></p>
|
||||
<p>输出：</p>
|
||||
<p>算法定位的R峰坐标：<code>./PSG_Text/<sampID>/Rpeak_final_采样率.txt</code></p>
|
||||
<h4>3.1.2 J峰算法定位</h4>
|
||||
<p>输入：</p>
|
||||
<p>滤波后的BCG信号：<code>./OrgBCG_Text/<sampID>/BCG_Filter_采样率.txt</code></p>
|
||||
<p>输出：</p>
|
||||
<p>算法定位的J峰坐标：<code>./OrgBCG_Text/<sampID>/Jpeak_revise_采样率.txt</code></p>
|
||||
<h4>3.2 人工纠正</h4>
|
||||
<h4>3.2.1 R峰人工纠正</h4>
|
||||
<p>输入：</p>
|
||||
<p>滤波后的ECG信号：<code>./PSG_Text/<sampID>/ECG_Filter_采样率.txt</code></p>
|
||||
<p>算法定位的R峰坐标：<code>./PSG_Text/<sampID>/Rpeak_final_采样率.txt</code></p>
|
||||
<p>粗同步后的位置索引：<code>./Label/<sampID>/Approximately_Align_Info.csv</code></p>
|
||||
<p>输出：</p>
|
||||
<p>人工纠正后的R峰坐标：<code>./PSG_Text/<sampID>/Rpeak_final_corrected_采样率.txt</code></p>
|
||||
<h4>3.2.2 J峰人工纠正*</h4>
|
||||
<p>输入：</p>
|
||||
<p>滤波后的BCG信号：<code>./OrgBCG_Text/<sampID>/BCG_Filter_采样率.txt</code></p>
|
||||
<p>算法定位的J峰坐标：<code>./OrgBCG_Text/<sampID>/Jpeak_revise_采样率.txt</code></p>
|
||||
<p>粗同步后的位置索引：<code>./Label/<sampID>/Approximately_Align_Info.csv</code></p>
|
||||
<p>输出：</p>
|
||||
<p>人工纠正后的J峰坐标：<code>./OrgBCG_Text/<sampID>/Jpeak_revise_corrected_采样率.txt</code></p>
|
||||
<h4>3.3 数据片段起止对齐、数据采样率同步</h4>
|
||||
<p>输入：</p>
|
||||
<p>滤波后的ECG信号：<code>./PSG_Text/<sampID>/ECG_Filter_采样率.txt</code></p>
|
||||
<p>人工纠正后的R峰坐标：<code>./PSG_Text/<sampID>/Rpeak_final_corrected_采样率.txt</code></p>
|
||||
<p>滤波后的BCG信号：<code>./OrgBCG_Text/<sampID>/BCG_Filter_采样率.txt</code></p>
|
||||
<p>人工纠正后的J峰坐标：<code>./OrgBCG_Text/<sampID>/Jpeak_revise_corrected_采样率.txt</code></p>
|
||||
<p>原始OrgBCG信号：<code>./OrgBCG_Text/<sampID>/OrgBCG_Raw_采样率.txt</code></p>
|
||||
<p>粗同步后的位置索引：<code>./Label/<sampID>/Approximately_Align_Info.csv</code></p>
|
||||
<p>输出：</p>
|
||||
<p>精同步对齐信息：<code>./Label/<sampID>/Precisely_Align_Info.txt</code></p>
|
||||
<p>同步后的ECG信号：<code>./PSG_Aligned/<sampID>/ECG_Sync_采样率.txt</code></p>
|
||||
<p>同步后的R峰坐标：<code>./PSG_Aligned/<sampID>/Rpeak_Sync_采样率.txt</code></p>
|
||||
<p>同步后的BCG信号：<code>./OrgBCG_Aligned/<sampID>/BCG_Sync_采样率.txt</code></p>
|
||||
<p>同步后的OrgBCG信号：<code>./OrgBCG_Aligned/<sampID>/OrgBCG_Sync_采样率.txt</code></p>
|
||||
<p>同步后的J峰坐标：<code>./OrgBCG_Aligned/<sampID>/Jpeak_Sync_采样率.txt</code></p>
|
||||
<h4>3.4、冗余数据切割、标签映射</h4>
|
||||
<p>输入：</p>
|
||||
<p>精同步对齐信息：<code>./Label/<sampID>/Precisely_Align_Info.txt</code></p>
|
||||
<p>原始的Flow T信号：<code>./PSG_Text/<sampID>/Flow T_Sync_采样率.txt</code></p>
|
||||
<p>原始的Flow P信号：<code>./PSG_Text/<sampID>/Flow P_Sync_采样率.txt</code></p>
|
||||
<p>原始的Tho信号：<code>./PSG_Text/<sampID>/Effort Tho_Sync_采样率.txt</code></p>
|
||||
<p>原始的Abd信号：<code>./PSG_Text/<sampID>/Effort Abd_Sync_采样率.txt</code></p>
|
||||
<p>原始的SpO2信号：<code>./PSG_Text/<sampID>/SpO2_Sync_采样率.txt</code></p>
|
||||
<p>原始的Snore信号：<code>./PSG_Text/<sampID>/Snore_Sync_采样率.txt</code></p>
|
||||
<p>原始的睡眠分期标签：<code>./PSG_Text/<sampID>/5_class_Raw_采样率.txt</code></p>
|
||||
<p>原始的睡眠呼吸暂停事件标签：<code>./PSG_Text/<sampID>/SA Label_Raw.csv</code></p>
|
||||
<p>输出：</p>
|
||||
<p>同步后的Flow T信号：<code>./PSG_Aligned/<sampID>/Flow T_Sync_采样率.txt</code></p>
|
||||
<p>同步后的Flow P信号：<code>./PSG_Aligned/<sampID>/Flow P_Sync_采样率.txt</code></p>
|
||||
<p>同步后的Tho信号：<code>./PSG_Aligned/<sampID>/Effort Tho_Sync_采样率.txt</code></p>
|
||||
<p>同步后的Abd信号：<code>./PSG_Aligned/<sampID>/Effort Abd_Sync_采样率.txt</code></p>
|
||||
<p>同步后的SpO2信号：<code>./PSG_Aligned/<sampID>/SpO2_Sync_采样率.txt</code></p>
|
||||
<p>同步后的Snore信号：<code>./PSG_Aligned/<sampID>/Snore_Sync_采样率.txt</code></p>
|
||||
<p>同步后的睡眠分期标签：<code>./PSG_Aligned/<sampID>/5_class_Sync_采样率.txt</code></p>
|
||||
<p>同步后的睡眠呼吸暂停事件标签：<code>./PSG_Aligned/<sampID>/SA Label_Sync.csv</code></p>
|
||||
<h3>4 体动标记</h3>
|
||||
<p>输入：</p>
|
||||
<p>同步后的BCG信号：<code>./OrgBCG_Aligned/<sampID>/BCG_Sync_采样率.txt</code></p>
|
||||
<p>同步后的OrgBCG信号：<code>./OrgBCG_Aligned/<sampID>/OrgBCG_Sync_采样率.txt</code></p>
|
||||
<p>输出：</p>
|
||||
<p>txt格式的体动标签：<code>./Label/<sampID>/Artifact_a_采样率.txt</code></p>
|
||||
<p>体动标签类型数量统计：<code>./Label/<sampID>/Artifact_b_采样率.txt</code></p>
|
||||
<p>csv格式的体动标签：<code>./Label/<sampID>/Artifact_c_采样率.csv</code></p>
|
||||
<h3>5 质量评估</h3>
|
||||
<p>输入：</p>
|
||||
<p>同步后的BCG信号：<code>./OrgBCG_Aligned/<sampID>/BCG_Sync_采样率.txt</code></p>
|
||||
<p>txt格式的体动标签：<code>./Label/<sampID>/Artifact_a_采样率.txt</code></p>
|
||||
<p>输出：</p>
|
||||
<p>质量标签：<code>./Label/<sampID>/SQ_label_10s.csv</code>或<code>./Label/<sampID>/SQ_label_30s.csv</code></p>
|
||||
<h3>6 呼吸提取</h3>
|
||||
<p>输入：</p>
|
||||
<p>同步后的OrgBCG信号：<code>./OrgBCG_Aligned/<sampID>/OrgBCG_Sync_采样率.txt</code></p>
|
||||
<p>同步后的Tho信号：<code>./PSG_Aligned/<sampID>/Effort Tho_Sync_采样率.txt</code></p>
|
||||
<p>txt格式的体动标签：<code>./Label/<sampID>/Artifact_a_采样率.txt</code></p>
|
||||
<p>输出：</p>
|
||||
<p>呼吸可用性标签：<code>./Label/<sampID>/Resp_quality_label.txt</code></p>
|
||||
<p>Tho信号呼吸间期标签：<code>./Label/<sampID>/Tho_peak_采样率.txt</code></p>
|
||||
<h3>8 呼吸暂停事件标注</h3>
|
||||
<p>输入：</p>
|
||||
<p>同步后的OrgBCG信号：<code>./OrgBCG_Aligned/<sampID>/OrgBCG_Sync_采样率.txt</code></p>
|
||||
<p>txt格式的体动标签：<code>./Label/<sampID>/Artifact_a_采样率.txt</code></p>
|
||||
<p>同步后的Flow T信号：<code>./PSG_Aligned/<sampID>/Flow T_Sync_采样率.txt</code></p>
|
||||
<p>同步后的Flow P信号：<code>./PSG_Aligned/<sampID>/Flow P_Sync_采样率.txt</code></p>
|
||||
<p>同步后的Tho信号：<code>./PSG_Aligned/<sampID>/Effort Tho_Sync_采样率.txt</code></p>
|
||||
<p>同步后的Abd信号：<code>./PSG_Aligned/<sampID>/Effort Abd_Sync_采样率.txt</code></p>
|
||||
<p>同步后的SpO2信号：<code>./PSG_Aligned/<sampID>/SpO2_Sync_采样率.txt</code></p>
|
||||
<p>同步后的睡眠呼吸暂停事件标签：<code>./PSG_Aligned/<sampID>/SA Label_Sync.csv</code></p>
|
||||
<p>输出：</p>
|
||||
<p>修正后的呼吸暂停标签：<code>./Label/<sampID>/SA Label_corrected.csv</code></p>
|
||||
<p>新增的呼吸暂停标签：<code>./Label/<sampID>/SA Label_add.csv</code></p>
|
||||
Reference in New Issue
Block a user